PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912628
Common NameARALYDRAFT_912628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 199aa    MW: 21488.7 Da    PI: 7.8067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912628genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182978255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  912628 29 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 78
            69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8132986IPR001471AP2/ERF domain
SMARTSM003809.1E-392992IPR001471AP2/ERF domain
CDDcd000181.49E-273088No hitNo description
PfamPF008474.2E-123078IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-303087IPR001471AP2/ERF domain
PRINTSPR003675.5E-93041IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-213087IPR016177DNA-binding domain
PRINTSPR003675.5E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
METATEVATV VSTPAVTVAA AATRKREKPY KGIRMRKWGK WVAEIREPNK RSRIWLGSYS  60
TPEAAARAYD TAVFYLRGPS ARLNFPELLA GVTVAGGGGG GGNGGGDMSA AYIRRKAAEV  120
GAQVDALEAA GAGGNRHHHH HHHHQQRGNH DYGDNLSDYH INDDHMECSS KEGFKRCNGS  180
LERVDLNKLP DPETSDDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-152886463ATERF1
3gcc_A1e-152886463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031030.0AF003103.1 Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial cds.
GenBankAJ0025980.0AJ002598.1 Arabidopsis thaliana mRNA for TINY-like protein.
GenBankAL1615900.0AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86.
GenBankBT0203170.0BT020317.1 Arabidopsis thaliana At4g36900 gene, complete cds.
GenBankBT0257570.0BT025757.1 Arabidopsis thaliana At4g36900 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997070.0Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866963.11e-146hypothetical protein ARALYDRAFT_912628
SwissprotQ9SW631e-110RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLD7MAQ11e-146D7MAQ1_ARALL; Putative uncharacterized protein
STRINGscaffold_700370.11e-146(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.15e-89related to AP2 10